genenetwork3/tests/performance, branch migrate-to-python3.10 GeneNetwork3 REST API for data science and machine learning http://git.genenetwork.org/genenetwork3/atom?h=migrate-to-python3.10 2023-04-06T09:31:05+00:00 Remove deprecated `gn3.db_utils.database_connector` function 2023-04-06T09:31:05+00:00 Frederick Muriuki Muriithi 2023-04-06T09:31:05+00:00 urn:sha1:17abad9300e4a96a14f94da486ef8307f7d27e06 Remove the deprecated function and fix a myriad of bugs that arise from removing the function. Issue: https://issues.genenetwork.org/issues/bugfix_coupling_current_app_and_db_utils Fix tests, and issues caught by tests 2022-03-08T05:07:38+00:00 Frederick Muriuki Muriithi 2022-03-08T05:07:38+00:00 urn:sha1:e30f9a9b746f7dcdc8707e66cc65e580e6f83f47 Fix some issues caught by tests due to changes introducing the hand-off of the partial correlations computations to an external process Fix some issues due to the changes that introduce context managers for database connections Update some tests to take the above two changes into consideration Fix a myriad of linter issues 2022-02-21T13:23:06+00:00 Frederick Muriuki Muriithi 2022-02-21T13:23:06+00:00 urn:sha1:a35fce27875d9db80dce1976b6f8ee8c00ecfe0a * Use `with` in place of plain `open` * Use f-strings in place of `str.format()` * Remove string interpolation from queries - provide data as query parameters * other minor fixes minor fixes 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-09T17:31:43+00:00 urn:sha1:9d6af6049fa73c6aae4d224245d319e87bccbd6a remove ununsed variables 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-09T17:27:20+00:00 urn:sha1:c361cc5c16914e43689db8b7f723c32986e4cc20 refactor perf query functions 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-09T17:24:36+00:00 urn:sha1:16fc8e6be584299eb839bf1be54d7ee472d2321b rename perf query file 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-09T17:23:58+00:00 urn:sha1:72b3396ac8ccb4023122bd66d93c7cc63b4b6e6f pep8 formatting 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-08T00:48:04+00:00 urn:sha1:2431d8538625da97b07571c61f0d0dd29c5d880a add types and dataset names 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-08T00:00:35+00:00 urn:sha1:d15cbf953bd3b3e9260e88d5663a1cf20414d776 initial commit for queries perfomance tests 2021-06-11T05:57:54+00:00 Alexander Kabui 2021-06-07T22:40:47+00:00 urn:sha1:ffeb3a61f770a78ad5b47e5587bae5a9bcb2f77d