genenetwork3/scripts/index-genenetwork, branch auth/implement-authorization-code-flowGeneNetwork3 REST API for data science and machine learning
http://git.genenetwork.org/genenetwork3/atom?h=auth%2Fimplement-authorization-code-flow2023-04-05T11:51:04+00:00Enable use of `database_connection` in scripts without current_app2023-04-05T11:51:04+00:00Frederick Muriuki Muriithi2023-04-04T07:07:03+00:00urn:sha1:3d873435f0d464864d4d691d6be4db40931fac05
There is need to run external scripts using the same configurations as the
application but without the need to couple the script to the application.
In this case, we provide the needed configuration directly in the CLI, and
modify the existing `gn3.db_utils.database_connection` function to allow it to
work coupled to the app or otherwise.
scripts: Fallback to 1 worker when indexing.2023-02-13T17:36:09+00:00Arun Isaac2023-02-13T17:35:13+00:00urn:sha1:283e7f08701ed80cdfeb8773df38c0c30227a10c
* scripts/index-genenetwork (worker_queue): Set default number of workers to 1
if the number of CPUs cannot be determined.
scripts: Type hint xapian indexing script.2023-02-13T17:36:09+00:00Arun Isaac2023-02-13T17:33:27+00:00urn:sha1:152d0fb36b76b7c68d8202ba3665617bad3e684b
* scripts/index-genenetwork: Import Callable, Generator, Iterable and List
from typing. Type hint all functions.
Add xapian indexing script.2022-10-18T12:15:33+00:00Arun Isaac2022-10-18T09:10:47+00:00urn:sha1:06da0390a1de5d0aa8eb6d7a0ed3120e350f8a0b
* scripts/index-genenetwork: New file.
* setup.py (install_requires): Add click, pymonad and xapian-bindings.
(scripts): Add scripts/index-genenetwork.