genenetwork3/guix.scm, branch auth/implement-authorization-code-flow GeneNetwork3 REST API for data science and machine learning http://git.genenetwork.org/genenetwork3/atom?h=auth%2Fimplement-authorization-code-flow 2022-03-29T08:57:01+00:00 guix.scm: Remove unused modules. 2022-03-29T08:57:01+00:00 Frederick Muriuki Muriithi 2022-03-29T01:49:03+00:00 urn:sha1:1d4d6d91172bec1e32fa3632d8c4b13c4e0d31f7 Remove unused modules from the `use-modules` arguments. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> guix.scm: Inherit from (gn packages genenetwork). 2021-12-09T11:09:26+00:00 Arun Isaac 2021-12-09T11:09:26+00:00 urn:sha1:744c4396f6cf80d29acf99bdf685c03b0126fe45 We base this off the genenetwork3 package defined in (gn packages genenetwork). That way, we don't have to duplicate the package definition in multiple places. * guix.scm (genenetwork3): Inherit from genenetwork3 package definition in (gn packages genenetwork). Implement dataset metadata API endpoint. 2021-12-02T11:33:52+00:00 Arun Isaac 2021-11-19T11:12:00+00:00 urn:sha1:0a29e362bd8627b9346e2260a14c81a46e2a76d3 * guix.scm: Import (gnu packages rdf). (genenetwork3)[propagated-inputs]: Add python-sparqlwrapper. * gn3/settings.py (SPARQL_ENDPOINT): New variable. * gn3/api/general.py: Import datasets from gn3.db. (dataset_metadata): New API endpoint. * gn3/db/datasets.py: Import re, Template from string, Dict and Optional from typing, JSON and SPARQLWrapper from SPARQLWrapper, SPARQL_ENDPOINT from gn3.settings. (sparql_query, dataset_metadata): New functions. Replace guix environment with guix shell. 2021-11-19T11:46:07+00:00 Arun Isaac 2021-11-19T11:46:07+00:00 urn:sha1:abc0d36f39c691652fee81bce808d625fc368e72 * README.md, guix.scm: Replace guix environment with guix shell. Do not recommend GUIX_PACKAGE_PATH. 2021-11-19T11:45:01+00:00 Arun Isaac 2021-11-19T11:45:01+00:00 urn:sha1:8488b57aa5b193b2addc034026af875f1145d61f * guix.scm: Do not recommend GUIX_PACKAGE_PATH. Remove gemma specific instructions from guix.scm. 2021-11-19T11:43:17+00:00 Arun Isaac 2021-11-19T11:43:17+00:00 urn:sha1:51960ae8867367d0708b9c09f4de84530b25e786 * guix.scm: Remove gemma specific instructions. Sort inputs in package definition. 2021-11-19T11:27:37+00:00 Arun Isaac 2021-11-19T11:27:37+00:00 urn:sha1:9c8366f6a79bd3e7bfef044f6e7758bb1b6fb120 * guix.scm (genenetwork3)[propagated-inputs]: Sort. Remove duplicated python-plotly dependency. 2021-11-19T11:24:55+00:00 Arun Isaac 2021-11-19T11:24:55+00:00 urn:sha1:f19ae84077995e621fd559bc0e56127800593f99 * guix.scm (genenetwork3)[propagated-inputs]: Remove python-plotly. Remove sqlalchemy. 2021-11-16T07:14:22+00:00 Arun Isaac 2021-11-16T07:14:22+00:00 urn:sha1:8c72fa0cfdccb55e22b98b5f242f07d530e7c573 * gn3/settings.py (SQLALCHEMY_TRACK_MODIFICATIONS): Delete variable. * guix.scm (genenetwork3)[propagated-inputs]: Remove python-sqlalchemy-stubs. * setup.py: Remove sqlalchemy-stubs from install_requires. Remove repeated input python-flask-cors. 2021-11-10T10:14:45+00:00 Arun Isaac 2021-11-10T10:14:45+00:00 urn:sha1:189435602e2e5c94d7cb80254242fa68406a132c * guix.scm (genenetwork3)[propagated-inputs]: Remove python-flask-cors.