genenetwork3/gn3/computations/diff.py, branch technical-specification GeneNetwork3 REST API for data science and machine learning http://git.genenetwork.org/genenetwork3/atom?h=technical-specification 2022-03-08T05:07:38+00:00 Fix tests, and issues caught by tests 2022-03-08T05:07:38+00:00 Frederick Muriuki Muriithi 2022-03-08T05:07:38+00:00 urn:sha1:e30f9a9b746f7dcdc8707e66cc65e580e6f83f47 Fix some issues caught by tests due to changes introducing the hand-off of the partial correlations computations to an external process Fix some issues due to the changes that introduce context managers for database connections Update some tests to take the above two changes into consideration Replace list with a tuple as an argument when setting success_codes 2021-06-29T11:50:30+00:00 BonfaceKilz 2021-06-29T10:16:09+00:00 urn:sha1:d6715cff2e5a1771b22bb2ce7680347cad501841 * gn3/commands.py (run_cmd): Replace type of success_codes from List to Tuple * gn3/computations/diff.py (generate_diff): Pass success_codes as a Tuple when calling "run_cmd". gn3: diff: Set success_codes when running the diff tool 2021-06-29T11:50:30+00:00 BonfaceKilz 2021-06-29T10:08:25+00:00 urn:sha1:a749941443246638df825adb8e9e8886d2ae9535 Add a diffing function 2021-06-29T11:50:30+00:00 BonfaceKilz 2021-06-28T09:18:30+00:00 urn:sha1:c1d367b89a95277b25c8e3cffc0b82fb4d081fa0 For now the diff function uses the Linux tool "diff" to generate the diff since it is efficient and straightforward. * gn3/computations/diff.py (generate_diff): New function. * tests/unit/computations/test_diff.py: Test cases for ☝🏾.