GeneNetwork3 REST API for data science and machine learning http://git.genenetwork.org/genenetwork3/atom?h=ci-cd-scripts 2022-01-22T06:23:14+00:00 2022-01-22T06:23:14+00:00 Alexander Kabui 2022-01-13T12:22:51+00:00 urn:sha1:0109efc7abf483f990557197fdd22610d93097b9 2022-01-22T06:23:14+00:00 Alexander Kabui 2021-10-14T07:58:01+00:00 urn:sha1:b6f67cd4addd233bf3c95f4e09a2cc0833988c60 2022-01-10T05:15:19+00:00 Frederick Muriuki Muriithi 2021-12-30T07:21:46+00:00 urn:sha1:389fe9fee11760d8d046983bf27c82c019fd6d97 Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi Comment: https://github.com/genenetwork/genenetwork3/pull/67#issuecomment-1000828159 * Convert NaN values to None to avoid possible bugs with the string replace method used before. 2021-12-24T11:36:14+00:00 Frederick Muriuki Muriithi 2021-12-20T04:19:16+00:00 urn:sha1:ac8528c5847f4a517c16b5283c06d3caeae8ef5e Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * `NaN` is not a valid JSON value, and leads to errors in the code. This commit replaces all `NaN` values with `null`. 2021-12-24T11:36:14+00:00 Frederick Muriuki Muriithi 2021-12-22T06:22:49+00:00 urn:sha1:c813dd68230a027b1b5acdbe9d3dba46f6bd1ad0 Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Encode bytes objects to string * Encode NaN values to "null" * gn3/api/correlation.py: 2021-12-24T11:36:14+00:00 Frederick Muriuki Muriithi 2021-12-22T06:29:11+00:00 urn:sha1:ed8ee3077211cc227089f87929a70ac8b7c4593f Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Add an API endpoint for the partial correlation. * gn3/api/correlation.py: 2021-12-17T13:56:57+00:00 Frederick Muriuki Muriithi 2021-12-17T13:56:57+00:00 urn:sha1:a9c760f1125423efd5b5a8e9f85ea84d23f10a11 Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Add an API endpoint for the partial correlation. 2021-12-02T11:33:52+00:00 Arun Isaac 2021-11-19T11:12:00+00:00 urn:sha1:0a29e362bd8627b9346e2260a14c81a46e2a76d3 * guix.scm: Import (gnu packages rdf). (genenetwork3)[propagated-inputs]: Add python-sparqlwrapper. * gn3/settings.py (SPARQL_ENDPOINT): New variable. * gn3/api/general.py: Import datasets from gn3.db. (dataset_metadata): New API endpoint. * gn3/db/datasets.py: Import re, Template from string, Dict and Optional from typing, JSON and SPARQLWrapper from SPARQLWrapper, SPARQL_ENDPOINT from gn3.settings. (sparql_query, dataset_metadata): New functions. 2021-10-19T07:12:51+00:00 Frederick Muriuki Muriithi 2021-10-06T08:25:38+00:00 urn:sha1:7627378dd1eb52055f4e25047ba53a2d2e4c092f Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the request endpoint, so that it produces a vertical or horizontal heatmap depending on the user's request. 2021-10-12T20:56:31+00:00 zsloan 2021-10-12T20:56:31+00:00 urn:sha1:6e211182354fb4d6941e3a44ec1ec9d378b0e4ef