GeneNetwork3 REST API for data science and machine learning http://git.genenetwork.org/genenetwork3/atom?h=technical-specification 2022-04-05T07:18:27+00:00 2022-04-05T07:18:27+00:00 Frederick Muriuki Muriithi 2022-04-04T08:11:36+00:00 urn:sha1:2edb63e9f09172755c87b148d781b4bb75033c53 * Issue: https://issues.genenetwork.org/topics/documentation/gn-hacking-documentation.html Add a technical specification document for GeneNetwork to detail the considerations taken, and technologies used in implementing the system. 2021-05-19T11:36:28+00:00 Pjotr Prins 2021-05-19T11:36:28+00:00 urn:sha1:afdddb23851465203cd5dab26300b09a5cd6d405 2021-05-19T07:26:17+00:00 Pjotr Prins 2021-05-19T07:26:17+00:00 urn:sha1:d8c887c5be5b0dbf108cca6121d805b93311ee91 2021-05-19T06:57:59+00:00 Pjotr Prins 2021-05-19T06:57:59+00:00 urn:sha1:9f1770f5a0aaad1f156095dc445aeac2f20dc330 2021-05-19T06:30:28+00:00 Pjotr Prins 2021-05-19T06:30:28+00:00 urn:sha1:92584ab4cd23edf309927aad3af7a08e8b8f8b08 2021-05-18T08:03:48+00:00 Pjotr Prins 2021-05-18T08:03:48+00:00 urn:sha1:e174551e624e8d9df5d9f143fb0571c78994940e 2021-05-18T07:45:55+00:00 Pjotr Prins 2021-05-18T07:45:55+00:00 urn:sha1:71b9b1e81f3140e66801b4cc78362cee94329243 2021-05-18T07:34:12+00:00 Pjotr Prins 2021-05-18T07:33:49+00:00 urn:sha1:73be3e40455e106d061ad13928bf66840bf314ed 2021-03-22T22:14:37+00:00 BonfaceKilz 2021-03-22T15:46:27+00:00 urn:sha1:a35933013cede542d03d678b6e4a92f4e8f2cf40 2021-03-16T08:38:13+00:00 Alexander Kabui 2021-03-16T08:38:13+00:00 urn:sha1:56ce88ad31dec3cece63e9370ca4e4c02139753b * delete unwanted correlation stuff * Refactor/clean up correlations (#4) * initial commit for Refactor/clean-up-correlation * add python scipy dependency * initial commit for sample correlation * initial commit for sample correlation endpoint * initial commit for integration and unittest * initial commit for registering correlation blueprint * add and modify unittest and integration tests for correlation * Add compute compute_all_sample_corr method for correlation * add scipy to requirement txt file * add tissue correlation for trait list * add unittest for tissue correlation * add lit correlation for trait list * add unittests for lit correlation for trait list * modify lit correlarion for trait list * add unittests for lit correlation for trait list * add correlation metho in dynamic url * add file format for expected structure input while doing sample correlation * modify input data structure -> add trait id * update tests for sample r correlation * add compute all lit correlation method * add endpoint for computing lit_corr * add unit and integration tests for computing lit corr * add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation * add unittest and integration tests for tissue correlation Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com> * update guix scm file * fix pylint error for correlations api Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>