genenetwork2/scripts, branch testing GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=testing 2024-10-29T19:12:01+00:00 Read connection detail from file. Use contextmanager. 2024-10-29T19:12:01+00:00 Frederick Muriuki Muriithi 2024-10-29T19:12:01+00:00 urn:sha1:bfbefb6594c0b063ce169aa5f14dc9bc341c97e9 Read connection details from file to make it easier to change host(s) in use. Use contextmanager to manage the connections. Use argparse.ArgumentParser to collect CLI args from user 2024-10-29T19:11:02+00:00 Frederick Muriuki Muriithi 2024-10-29T19:01:27+00:00 urn:sha1:37282ca8cdd10c82a4d84b3fb9a70777d0166914 Collect arguments from the CLI using argparse rather than sys.argv directly. Change indentation, wrap code in function and create entry-point. 2024-10-29T17:59:54+00:00 Frederick Muriuki Muriithi 2024-10-29T17:59:54+00:00 urn:sha1:d2219521f39cad50655384d079573e1428f3c0ff Update ProbeSetSE table schema. 2024-03-22T08:15:15+00:00 Frederick Muriuki Muriithi 2024-03-22T08:15:15+00:00 urn:sha1:b91c9febb3e0197f683d72e7511c625b77e9cde0 Move default settings into gn2 module. 2024-01-02T13:40:56+00:00 Arun Isaac 2023-12-30T09:27:49+00:00 urn:sha1:ff679636d3ee9ae2388fab3fe5d091ef2f00a8e3 Add script for converting the HXBBXH genotype file provided by Hao. 2023-10-24T17:41:51+00:00 zsloan 2023-10-24T17:41:51+00:00 urn:sha1:554da75ce6617ee5d91bc82085cfa2857fbc7637 Paths and sample/chromosome lists are hard-coded just because this was probably a one-time thing, but still commiting it since it's good to have it around in case we need to use it again Add script for creating list of ProbeSet datasets with NAs for Max QTL 2023-10-24T17:41:16+00:00 zsloan 2023-10-24T17:41:16+00:00 urn:sha1:79ce392c5a482a0460e8a91344a0e63c9e9a8085 Update calls to `database_connection` function 2023-06-22T15:18:31+00:00 Frederick Muriuki Muriithi 2023-06-22T13:31:18+00:00 urn:sha1:971d29e82391cc269405f59b5aad5f31061b633d Pass in the database URI at call time. Add DataAnalyzer.py script to maintenance scripts 2023-03-08T20:35:53+00:00 zsloan 2023-03-08T20:35:53+00:00 urn:sha1:638ee60bc2930ebe3b73814dab6aa3b124211345 Add perf scripts that compare fetching a trait using GN API vs LMDB 2023-02-03T10:08:35+00:00 Munyoki Kilyungi 2023-02-03T09:58:13+00:00 urn:sha1:c7d242233403594d7a5422344a49a16c2c738222 * scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New files. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>