genenetwork2/scripts, branch lmdb-code/refactoring GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=lmdb-code%2Frefactoring 2023-03-08T20:35:53+00:00 Add DataAnalyzer.py script to maintenance scripts 2023-03-08T20:35:53+00:00 zsloan 2023-03-08T20:35:53+00:00 urn:sha1:638ee60bc2930ebe3b73814dab6aa3b124211345 Add perf scripts that compare fetching a trait using GN API vs LMDB 2023-02-03T10:08:35+00:00 Munyoki Kilyungi 2023-02-03T09:58:13+00:00 urn:sha1:c7d242233403594d7a5422344a49a16c2c738222 * scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New files. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Dump metadata in addition to sample data. 2023-01-26T13:03:25+00:00 Munyoki Kilyungi 2023-01-24T20:48:27+00:00 urn:sha1:f682ff4c27b63e5e400603f32c23523a62e637e3 * scripts/sampledata: Dump metadata in addition to data. Make dump script faster by using concurrency module 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-20T10:38:55+00:00 urn:sha1:220f37cb56bb7656f13286c4448c8736a30d420e Dump all sample data into a given directory 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T08:51:24+00:00 urn:sha1:6357001a7a413595b7fdcd5959fbb63a2d074f3f * scripts/sampledata.py: Import gen_dropdown_json. (main): Dump all the sample data from all the datasets into a given directory. Return a trait's display name if the name is non-existent 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T08:49:48+00:00 urn:sha1:5cc778e3db7035b49a8c5f37b98dcd3a07fafa26 * scripts/sampledata.py (fetch_all_traits): Should the name of a trait not exists, e.g. in probeset data, return it's display name. Update demo to dump entire dataset for BXDPublish 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T07:54:02+00:00 urn:sha1:234f110e1e492a2701a6cf8cd2b45aa2341c8041 * scripts/sampledata.py: Import os and sys. <__name__>: Add demo to dump "BXDPublish" dataset. Remove hard-coded values 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T07:53:25+00:00 urn:sha1:ad84b1a142d928b3457f36c9eae3c087f13f067d * scripts/sampledata.py (dump_sample_data): Remove hard-coded values for trait_id and dataset_name. Fix typo 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T07:53:13+00:00 urn:sha1:77ed8f6a380aa274fb7fd8b9607bc6994bae845f Add example that demos dumping data from an entire dataset 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-16T14:16:40+00:00 urn:sha1:c6d56cd53e54fd352afb91df053cbf2c4a51338b