genenetwork2/scripts, branch feature/textfile-generator GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=feature%2Ftextfile-generator 2023-01-20T12:02:46+00:00 Make dump script faster by using concurrency module 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-20T10:38:55+00:00 urn:sha1:220f37cb56bb7656f13286c4448c8736a30d420e Dump all sample data into a given directory 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T08:51:24+00:00 urn:sha1:6357001a7a413595b7fdcd5959fbb63a2d074f3f * scripts/sampledata.py: Import gen_dropdown_json. (main): Dump all the sample data from all the datasets into a given directory. Return a trait's display name if the name is non-existent 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T08:49:48+00:00 urn:sha1:5cc778e3db7035b49a8c5f37b98dcd3a07fafa26 * scripts/sampledata.py (fetch_all_traits): Should the name of a trait not exists, e.g. in probeset data, return it's display name. Update demo to dump entire dataset for BXDPublish 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T07:54:02+00:00 urn:sha1:234f110e1e492a2701a6cf8cd2b45aa2341c8041 * scripts/sampledata.py: Import os and sys. <__name__>: Add demo to dump "BXDPublish" dataset. Remove hard-coded values 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T07:53:25+00:00 urn:sha1:ad84b1a142d928b3457f36c9eae3c087f13f067d * scripts/sampledata.py (dump_sample_data): Remove hard-coded values for trait_id and dataset_name. Fix typo 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-17T07:53:13+00:00 urn:sha1:77ed8f6a380aa274fb7fd8b9607bc6994bae845f Add example that demos dumping data from an entire dataset 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-16T14:16:40+00:00 urn:sha1:c6d56cd53e54fd352afb91df053cbf2c4a51338b Add a function that fetches all the traits given the right params 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-16T13:50:51+00:00 urn:sha1:000880beabe2fe495f048669c37634d55cfc3610 * scripts/sampledata.py (fetch_all_traits): New function. Create script to dumple sample data given the dataset and trait id 2023-01-20T12:02:46+00:00 Munyoki Kilyungi 2023-01-16T12:31:19+00:00 urn:sha1:609fca7ec0908c9937a3c3bd3862cf166e71214e * scripts/sampledata.py: New file. Give speciesid single quotes like the other config_dic keys, just for consistency 2022-06-03T19:32:14+00:00 zsloan 2022-06-03T19:32:14+00:00 urn:sha1:13450230b635194ffb6682e41d77cbaef2ca4b8b