genenetwork2/scripts/maintenance, branch notebooks_api GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=notebooks_api 2021-05-13T08:05:30+00:00 Fix load_phenotypes to run with GN2 latest 2021-05-13T08:05:30+00:00 Arthur Centeno 2021-05-13T08:05:30+00:00 urn:sha1:0dd04c5ca0521f59f93b45663bdfd67c916a9f3c Replace map on strip with a list comprehension that calls strip() 2020-10-28T22:23:22+00:00 BonfaceKilz 2020-10-28T22:23:22+00:00 urn:sha1:a56e5e9d5d0c3f157599677e937deb0bbb71debb * scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto. Replace "string.split" & "string.join" with python's inbuilt methods 2020-08-26T22:42:41+00:00 BonfaceKilz 2020-08-26T22:18:11+00:00 urn:sha1:357ca458695fbc60c97de3d1cdf89034a8722bc5 Replace tabs with spaces 2020-08-26T19:23:40+00:00 BonfaceKilz 2020-08-26T19:23:40+00:00 urn:sha1:768de71f09b116cad0f42c792c22a7dc410ea2f4 * scripts/maintenance/readProbeSetMean_v7.py: Run python-autopep8 on this file. Remove extra whitespace(or add it) from comma separated items 2020-08-19T00:57:05+00:00 BonfaceKilz 2020-08-19T00:57:05+00:00 urn:sha1:db41cd49b6d8ccd2c3318209118ffe098bc9293e See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> Make Python more idiomatic 2020-08-19T00:45:49+00:00 BonfaceKilz 2020-08-19T00:45:49+00:00 urn:sha1:3aaa28ea762c496eeb84e09e45194e3fd2a51673 Run `2to3-3.8 -f idioms -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms> Convert `raw_input` to `input` 2020-08-19T00:16:29+00:00 BonfaceKilz 2020-08-19T00:16:29+00:00 urn:sha1:e8e7f835861b6e4eb940a9f55b7769d225f2c87d Run `2to3-3.8 -f raw_input -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-raw_input> Convert the use of iterator’s next() methods to the next() function 2020-08-19T00:10:33+00:00 BonfaceKilz 2020-08-19T00:10:33+00:00 urn:sha1:8be6ecf3d6b70b40be97d4abebb59eabcce8c8f8 Run `2to3-3.8 -f next -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-next> Change `dict.has_key(key)` to `key in dict` 2020-08-18T23:41:46+00:00 BonfaceKilz 2020-08-18T23:41:46+00:00 urn:sha1:e55b1502340cc99cd8a5d705261a5ff3c87f3718 Run `2to3-3.8 -f has_key -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-has_key> Fix dictionary iteration methods 2020-08-18T23:34:42+00:00 BonfaceKilz 2020-08-18T23:31:31+00:00 urn:sha1:ba123e1e0fe693f9778993c3f8e5a70a28658a4c Run `2to3-3.8 -f dict -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-dict> and <https://stackoverflow.com/questions/17695456/why-does-python-3-need-dict-items-to-be-wrapped-with-list>