genenetwork2/scripts/maintenance/readProbeSetSE_v7.py, branch notebooks_api GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=notebooks_api 2020-10-28T22:23:22+00:00 Replace map on strip with a list comprehension that calls strip() 2020-10-28T22:23:22+00:00 BonfaceKilz 2020-10-28T22:23:22+00:00 urn:sha1:a56e5e9d5d0c3f157599677e937deb0bbb71debb * scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto. Replace "string.split" & "string.join" with python's inbuilt methods 2020-08-26T22:42:41+00:00 BonfaceKilz 2020-08-26T22:18:11+00:00 urn:sha1:357ca458695fbc60c97de3d1cdf89034a8722bc5 Make Python more idiomatic 2020-08-19T00:45:49+00:00 BonfaceKilz 2020-08-19T00:45:49+00:00 urn:sha1:3aaa28ea762c496eeb84e09e45194e3fd2a51673 Run `2to3-3.8 -f idioms -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms> Convert `raw_input` to `input` 2020-08-19T00:16:29+00:00 BonfaceKilz 2020-08-19T00:16:29+00:00 urn:sha1:e8e7f835861b6e4eb940a9f55b7769d225f2c87d Run `2to3-3.8 -f raw_input -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-raw_input> Change `dict.has_key(key)` to `key in dict` 2020-08-18T23:41:46+00:00 BonfaceKilz 2020-08-18T23:41:46+00:00 urn:sha1:e55b1502340cc99cd8a5d705261a5ff3c87f3718 Run `2to3-3.8 -f has_key -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-has_key> Wrap `map()` in a `list` call 2020-08-18T23:33:46+00:00 BonfaceKilz 2020-08-18T23:00:11+00:00 urn:sha1:06edbb8455f1e85a3818c33c4ef4d42e6a061d43 Run `2to3-3.8 -f map -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-map> Wrap print statements in parentheses 2020-08-18T13:59:52+00:00 BonfaceKilz 2020-08-17T14:41:58+00:00 urn:sha1:af330a2aa7b36fd0cf8505eb20fa06d2ed58b86b Replace DOS style line endings with UNIX style ones 2020-08-18T13:59:52+00:00 BonfaceKilz 2020-08-17T17:37:57+00:00 urn:sha1:6c50dff7552df87318253d77ca93e4cc8e26f283 * scripts/maintenance/readProbeSetSE_v7.py: Run *dos2unix* against file Apply pep8 2020-08-18T13:59:42+00:00 BonfaceKilz 2020-08-17T17:35:53+00:00 urn:sha1:5c5aefc79d45d66ab30bdbbc5dab24b3f5f79dc2 * scripts/maintenance/readProbeSetSE_v7.py: Apply pep8 to file to replace tabs with spaces and use correct indentation. @acenteno added data upload scripts into main repo 2018-04-03T07:50:28+00:00 Pjotr Prins 2018-04-03T07:50:28+00:00 urn:sha1:fb57f05083b0512b7bb9f9e15b6cc6efaded5a1f