genenetwork2/scripts/maintenance/readProbeSetMean_v7.py, branch testing GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=testing 2022-03-10T05:55:26+00:00 Use context manager with database connection 2022-03-10T05:55:26+00:00 Frederick Muriuki Muriithi 2022-03-10T05:55:26+00:00 urn:sha1:4a7e2c1602ed82aabd7d04953067ba49cb1cebff Use the `with` context manager with database connections and cursors to ensure that they are closed once they are no longer needed. Where it was not feasible to use the `with` context manager without a huge refactor/rewrite, the cursors and connections are closed manually. Replace "string.split" & "string.join" with python's inbuilt methods 2020-08-26T22:42:41+00:00 BonfaceKilz 2020-08-26T22:18:11+00:00 urn:sha1:357ca458695fbc60c97de3d1cdf89034a8722bc5 Replace tabs with spaces 2020-08-26T19:23:40+00:00 BonfaceKilz 2020-08-26T19:23:40+00:00 urn:sha1:768de71f09b116cad0f42c792c22a7dc410ea2f4 * scripts/maintenance/readProbeSetMean_v7.py: Run python-autopep8 on this file. Remove extra whitespace(or add it) from comma separated items 2020-08-19T00:57:05+00:00 BonfaceKilz 2020-08-19T00:57:05+00:00 urn:sha1:db41cd49b6d8ccd2c3318209118ffe098bc9293e See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> Make Python more idiomatic 2020-08-19T00:45:49+00:00 BonfaceKilz 2020-08-19T00:45:49+00:00 urn:sha1:3aaa28ea762c496eeb84e09e45194e3fd2a51673 Run `2to3-3.8 -f idioms -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-idioms> Wrap `map()` in a `list` call 2020-08-18T23:33:46+00:00 BonfaceKilz 2020-08-18T23:00:11+00:00 urn:sha1:06edbb8455f1e85a3818c33c4ef4d42e6a061d43 Run `2to3-3.8 -f map -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-map> Replace "raw_input" with "input" 2020-08-18T13:59:53+00:00 BonfaceKilz 2020-08-17T18:47:49+00:00 urn:sha1:b0f87da9cbb0a8a462d38472264ed34af5dd8912 * scripts/maintenance/readProbeSetMean_v7.py: Use "input". See https://docs.python.org/3/whatsnew/3.0.html#builtins Wrap print statements in parentheses 2020-08-18T13:59:52+00:00 BonfaceKilz 2020-08-17T14:41:58+00:00 urn:sha1:af330a2aa7b36fd0cf8505eb20fa06d2ed58b86b @acenteno added data upload scripts into main repo 2018-04-03T07:50:28+00:00 Pjotr Prins 2018-04-03T07:50:28+00:00 urn:sha1:fb57f05083b0512b7bb9f9e15b6cc6efaded5a1f