genenetwork2, branch lmdb-code/refactoring GeneNetwork (2nd generation) http://git.genenetwork.org/genenetwork2/atom?h=lmdb-code%2Frefactoring 2023-06-20T22:05:40+00:00 code refactoring 2023-06-20T22:05:40+00:00 Alexander_Kabui 2023-06-20T22:05:40+00:00 urn:sha1:0db7bfa307207c38d1727918f5192b39ffe1bda5 generate general info for file output 2023-06-20T21:19:23+00:00 Alexander_Kabui 2023-06-20T21:19:23+00:00 urn:sha1:46d32a65d27a5577d7a61f76fb55c7c2f32f46d3 code to fetch csv info 2023-06-20T21:06:30+00:00 Alexander_Kabui 2023-06-20T21:06:30+00:00 urn:sha1:7a5f04106ba3df4f3268d56d8813105d31d66733 code to fetch lmdb info for rust correlation preprocessing 2023-06-20T21:00:35+00:00 Alexander_Kabui 2023-06-20T21:00:35+00:00 urn:sha1:650eb1f019de3a921d739c5d00218b4151b4411b Create new collection via GN3 API 2023-05-15T10:57:45+00:00 Frederick Muriuki Muriithi 2023-05-15T10:57:45+00:00 urn:sha1:d5763a88090f57febb58fdae0cbfb24c76ffed6c * wqflask/wqflask/collect.py: Send data to the GN3 API to create the new collections. * wqflask/wqflask/oauth2/client.py: Ensure request is sent as a json request. * wqflask/wqflask/static/new/javascript/search_results.js: use "POST" rather than "GET" and send the traits also, in addition to the hash auth: Fetch anonymous collections from separate endpoint. 2023-05-12T09:53:24+00:00 Frederick Muriuki Muriithi 2023-05-12T09:53:24+00:00 urn:sha1:3d773719255109f3bdcc4adc6314bdafae18ad14 auth: Integrate sessions with auth 2023-05-12T08:57:12+00:00 Frederick Muriuki Muriithi 2023-05-12T08:57:12+00:00 urn:sha1:a175ea7ea3b0c85ca4e9c0909833f6842474e225 Rework the sessions to do what was handled by the soon-to-be-obsolete `wqflask.user_sessions` module. This is necessary in order to retain the expected functionality of the user collections, especially: * anonymous user collections * authenticated user collections * import of anonymous collections when user authenticates auth: Fetch user collections from GN3 2023-05-10T12:38:19+00:00 Frederick Muriuki Muriithi 2023-05-10T12:38:19+00:00 urn:sha1:96fb589371dd1700f0d0f7abc367098d6820c37a Fetch the user collections from GN3 for users that have authenticated. auth: bug-fix: Call `logged_in` function 2023-05-10T10:19:01+00:00 Frederick Muriuki Muriithi 2023-05-10T10:19:01+00:00 urn:sha1:5df9f0400f5457071a6e717ba68d72454f6f07f5 The `logged_in` symbol was changed from a plain variable into a function, so we need to call it to get its actual value. Integrate OAuth2 auth with GN2 UI 2023-05-09T10:19:50+00:00 Frederick Muriuki Muriithi 2023-05-09T10:19:50+00:00 urn:sha1:2babf1077277d6654203f642994866007aff3509 Update the templates to make use of the OAuth2 authentication rather than the older authentication that used Redis.