genecup/server.py, branch master Deep learning method for linking pubmed with custom ontology http://git.genenetwork.org/genecup/atom?h=master 2026-04-06T09:44:20+00:00 Combine pubmed online search to a single query 2026-04-06T09:44:20+00:00 Pjotr Prins 2026-04-06T09:44:20+00:00 urn:sha1:acca175362eb1d1ce2b0cd263c39537b2b8a6f2b Only 3 letter abbreviations 2026-04-06T09:16:54+00:00 Pjotr Prins 2026-04-06T09:16:54+00:00 urn:sha1:1add2e683ac93cb8e63a446332dd66504d4c9e61 Getting ontology results 2026-04-06T08:26:33+00:00 Pjotr Prins 2026-04-06T08:26:33+00:00 urn:sha1:5a551f6434a6b26adb0f604d64f703c677ea4b67 Create template 2026-04-06T07:57:53+00:00 Pjotr Prins 2026-04-06T07:57:53+00:00 urn:sha1:5da54ef6347acdba3613e3b1b161b66013817206 Get rid of outdated error 2026-04-05T16:02:01+00:00 Pjotr Prins 2026-04-05T16:02:01+00:00 urn:sha1:ddfb74eb61d4200d777d5335b0828ac86d1c6580 Use template to show intermediate phase 2026-04-05T15:59:29+00:00 Pjotr Prins 2026-04-05T15:59:29+00:00 urn:sha1:bbeb25ba4c25151f841f937bfbe0c4c0cd77f8c4 Show page when calling GEMINI API 2026-04-05T15:55:47+00:00 Pjotr Prins 2026-04-05T15:55:47+00:00 urn:sha1:59de73d7b09f2f398d8e043ffcb8b586e1d50bc5 Some cleanup and make GEMINI API cache work 2026-04-05T15:50:13+00:00 Pjotr Prins 2026-04-05T15:50:13+00:00 urn:sha1:cf2122244b0bfbc2e2b300df05f5aba636b55d5a The Gemini call now retries up to 3 times with a backoff delay (2s, then 4s) between attempts. 2026-04-05T15:34:45+00:00 Pjotr Prins 2026-04-05T15:34:45+00:00 urn:sha1:c3b48e3e234984ef3d2d4848bb1dab102852c5bb Also cache gemini results 2026-04-05T15:30:32+00:00 Pjotr Prins 2026-04-05T15:30:32+00:00 urn:sha1:f38a5be24654c753949065812661df83220bec3f