ccwl/scripts, branch main

ccwl: Implement js-expression.

2024-03-22T01:48:25+00:00

js-expression corresponds to ExpressionTool in the CWL specification. * ccwl/ccwl.scm (): New type. (js-expression): New macro. (function-inputs, function-outputs, function-object): Support objects. (function-input-keys): Mention objects in docstring. * ccwl/cwl.scm (function->cwl, workflow->cwl-scm): Support objects. (command->cwl-scm): Move staging requirements handling to ... (staging-requirements): ... this new function. (js-expression->cwl, js-expression->cwl-scm): New functions. * ccwl/graphviz.scm (function->dot): Support objects. (command->graph): Abstract to ... (single-node-workflow->graph): ... this new function. (js-expression->dot, js-expression->graph): New functions. * scripts/ccwl (main): Support objects. * doc/ccwl.skb (Cookbook){Javascript expressions via ExpressionTool}: New section. * doc/js-expression-iota.scm: New file.

scripts: Use unified function terminology.

2024-03-22T00:00:03+00:00

Call workflows and commands by our unified notion of "function". This makes it more succinct when adding more kinds of functions. * ccwl/cwl.scm (workflow-or-command->cwl): Rename to function->cwl. * ccwl/graphviz.scm (workflow-or-command->dot): Rename to function->dot. * scripts/ccwl (main): Use function->cwl and function->dot.

scripts: When ccwl crashes, say so explicitly.

2023-11-18T23:48:50+00:00

* scripts/ccwl (main): When ccwl crashes, say so explicitly.

scripts: Raise exception when file does not return supported object.

2023-09-28T22:51:21+00:00

* scripts/ccwl (main): Raise exception when file returns neither workflow nor command.

scripts: Support returning command objects from ccwl files.

2023-09-28T22:47:45+00:00

* scripts/ccwl (main): Replace workflow->cwl and workflow->dot with workflow-or-command->cwl and workflow-or-command->dot.

scripts: Catch and report &formatted-message conditions.

2023-09-28T21:39:22+00:00

* scripts/ccwl (main): Catch and report &formatted-message conditions.

scripts: Ignore quit exceptions when requesting the user report bugs.

2023-09-20T09:35:08+00:00

* scripts/ccwl: Import (ice-9 exceptions). (main): Do not print backtrace or request the user to report a bug for quit exceptions.

scripts: Set scheme mode in Emacs.

2023-09-20T09:19:33+00:00

* scripts/ccwl: Set scheme mode in Emacs.

scripts: Catch uncaught exceptions and request the user report them.

2023-09-20T09:17:58+00:00

* scripts/ccwl (main): Catch uncaught exceptions and request the user report them to the issue tracker.

scripts: Allow script to be loaded without executing main.

2023-09-20T08:42:36+00:00

Call main from the shebang command instead of calling it directly. This allows us to run "guile -l scripts/ccwl" without actually running main. This seems to be important for Emacs Geiser as it freezes up without this fix. * scripts/ccwl: Call main from shebang. Do not call main directly. (main): Accept args as regular argument instead of as a rest argument.